NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116239_10057685

Scaffold Ga0116239_10057685


Overview

Basic Information
Taxon OID3300010346 Open in IMG/M
Scaffold IDGa0116239_10057685 Open in IMG/M
Source Dataset NameAD_USMOca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3567
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016798Metagenome / Metatranscriptome244Y
F091896Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0116239_100576851F091896N/ADSISVQKLTIKLLHLQQDSELLANCYIQNNLYANIINIQDSVISLKDSVNASLETMYKQKVKKVKKQRNVATGIAFTEFLILIGVLAK*
Ga0116239_100576852F016798AGGAGMKKFILILVLLTLVSCEKEFKELQRSYVISNFIELNDDLDYKLIYFCDKYNAFEHFYDIKHTIFNEIGEHNYYKDMQSRMAVVSHTKDTGTCQFQHRTFYYLAEKYDIKGANILSESQQIAIMVQAFRDDKKNYWNGYKKLKKILVE*
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