NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116239_10151770

Scaffold Ga0116239_10151770


Overview

Basic Information
Taxon OID3300010346 Open in IMG/M
Scaffold IDGa0116239_10151770 Open in IMG/M
Source Dataset NameAD_USMOca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1795
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012026Metagenome / Metatranscriptome284Y
F061870Metagenome / Metatranscriptome131N
F080087Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0116239_101517701F080087N/AGNRTKNGAMRMQATATVTSASEMEHATAWKTSETEYDVRVPARYREYTCAHRVVAIYRRYGQITDYQYRVSKKELEEIERIVETRIEQTNNKGGHK*
Ga0116239_101517702F012026GGAGGMNLRELQATIANIIGQRAEAIDRLNRLTMIDDRFNPENIVTITAYKQAIEELSKELNRLETERAELLAREEAARKEYIAALNAYDEIYGRFPNAEKEAGEIRKRYAKITDAAEKARSIVLEKMNALTAVAGGFLPIPPAPSHAWRTYAKDYAFEIERGGD*
Ga0116239_101517704F061870GGAGGMKRRIEKLESLTAWKSLPDASEYIQVWAIDPDQEEAEKWFETRDGARVTDPKTIERLTAYYAEALRRGELNITARFEDDPEDTTGTGA*
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