NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116239_10538319

Scaffold Ga0116239_10538319


Overview

Basic Information
Taxon OID3300010346 Open in IMG/M
Scaffold IDGa0116239_10538319 Open in IMG/M
Source Dataset NameAD_USMOca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)768
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin016(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034939Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0116239_105383191F034939N/AAYLQKIPSDPLPNIHYTYSYLNSGESYRLGFNLEQGSGDWPAGTLAMGPNGISQDLLAASGIDWRDPNNWKNVPGYTCAVTYDQDRKAIKMVNYNRCVLAPTSSVYLPIDTSRKYYIETEYLTEGTTTYTFYLGTISYDESYNPLPGHPGGHDYFGASGDRPTSTNTWTFVVNKAIGGQPRTGESATTSIYYKWHPGTVWAKALVEPNWNGTQTTYVRNIRFYVE*
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Institute for Fundamental Biomedical Research
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