NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116238_10377726

Scaffold Ga0116238_10377726


Overview

Basic Information
Taxon OID3300010347 Open in IMG/M
Scaffold IDGa0116238_10377726 Open in IMG/M
Source Dataset NameAD_JPHGca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)924
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)34.72Long. (o)135.27Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041847Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0116238_103777261F041847N/AHRFELEKKPAFRYVRVTLHGGGETGMKGKRDLHFGTLVVDFANAPSPEEAGRVFLRGAARAFGYGPGFLEEALDRYPTLERFEEALPAGDRDLVNLLLEERRLLSVINNLPGNISLASYDYDGERVLHFKIQPLEPKWDCENPYEEDDVRISVGTAGNAWLGEVAEMFDERAPLTGEMDEVKERLLACMEEYIALGDRILAIRRAVPAEKTREAQKWAAYYSRIQGEQEVLAELLDRWRAILGEVVEAKDLSRNQALLDLLAVYNVVNRRELAVGEDGAIYEKPLFQESYFTERAGLADEYYHNVLV
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