Scaffold Ga0116236_10045672

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116236_10045672

Scaffold Ga0116236_10045672

Overview

Basic Information
Taxon OID	3300010353 Open in IMG/M
Scaffold ID	Ga0116236_10045672 Open in IMG/M
Source Dataset Name	AD_USCAca
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4737
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	33.8	Long. (^o)	-118.28	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071990	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116236_100456722	F071990	GGAGG	MSEPTARFRLIPQATAVAALDTPGERLAAIGGQSIISTGGGNEADFGTIDISAGAANSGVLTMLWDITADGGNTLVENFKLWMSSNGFDQAGSVCKFQPLSGADQASPSETENYVADGVVGSYTWATLDEAEPAAQNVFPSDEGSSMALSTTSDDAIMWAMYLAIASGETTGTYKGTTEGYELQFSFKYAYS*

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