NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129333_10000908

Scaffold Ga0129333_10000908


Overview

Basic Information
Taxon OID3300010354 Open in IMG/M
Scaffold IDGa0129333_10000908 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26127
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (13.21%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (5.56%)
Associated Families18

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)39.2637Long. (o)-76.0017Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001732Metagenome / Metatranscriptome644Y
F001840Metagenome / Metatranscriptome627Y
F003904Metagenome / Metatranscriptome462Y
F007169Metagenome / Metatranscriptome356N
F008356Metagenome / Metatranscriptome334Y
F009682Metagenome / Metatranscriptome314Y
F011298Metagenome / Metatranscriptome292Y
F011485Metagenome / Metatranscriptome290N
F014128Metagenome / Metatranscriptome265Y
F020140Metagenome / Metatranscriptome225Y
F022862Metagenome / Metatranscriptome212N
F025688Metagenome / Metatranscriptome200Y
F035227Metagenome172Y
F041765Metagenome / Metatranscriptome159Y
F053245Metagenome / Metatranscriptome141Y
F056337Metagenome / Metatranscriptome137N
F060851Metagenome / Metatranscriptome132N
F063489Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0129333_1000090810F008356N/AMNPSEFERTKPVNTYKKIKELEKLIKEEQVKTENLYANRIATLDTMLKAVHDLMDTFKKGE*
Ga0129333_1000090813F041765N/AMPSHKQIMEDSAAFFNKEVDKIILKISNAKTEKTRLKYLKQMIALRNRLTLEVKMLDDLGNF*
Ga0129333_1000090816F053245N/AMKQVTINIGDEDIKDLKEIFKNESEFKPQVRQDILIVEILRQVLNNPKIEVVEEIDL*
Ga0129333_1000090817F025688AGAAGMKFILNVDGTNNGGKFLESYAGQEVNIDSLYKDIDVNSPPLATLRTSDNKQHSIQLIDIRFINEYIFIQCFVIQHDEKHGGKVLLRLKPISE*
Ga0129333_100009082F035227N/AVNDNSSNIHRSINIFSLSDKDIKKYSLVKTGDSFKKDDYILLYDDQYVKISESSQLLKYKVLKENTVYRKK*
Ga0129333_1000090820F020140N/AMIHKFAVVVDKKSYDKLQQEDDFYLRVIILDVIRVLSDENESLEKYNEDLFYKCAKNIAGEIKMFEDENSVIFYAELSSGYLNNFFEEPLDDFE*
Ga0129333_1000090824F063489N/AMNKRYIVRDKDGAYQSAYNLALGKKQAYDWAMQCAKSVNGVIYYVDGDASKEQEVFRAPDSYRRS*
Ga0129333_1000090825F011298N/AMAHFVKLNVLDPGHDEVINKTNRHYNLQLINLDMVVNIEQSHVHSLIFTKNNTMHPIRVKESLDEILKLATPQ*
Ga0129333_1000090829F060851N/AMKAILEFNLPEDQRKFEMANQAADMVSALGHFEDRLRSYIKYGHEFKSANEALESIRALLHEEINLRRINIHDC*
Ga0129333_1000090836F007169N/AMSYQLQFDFETPEQKEKRLKEWQKQESEIDKMFETDGDYYTYNKYVDKFLDLLPYRLGWGFKNNWSELRWWIKCKYQQFRYGVSDDDVFSLESRIAEYIVPRLQYFKKKGKFGIPMKFLPSNYIYLEGEERDKVEKIGEKEIDRILDEMIFAFDYIINPDKYVPFPESSAKWDLKDRNYFNREKTIEEKAAWDDYIKKCEQYNIRKKQGLQLFAEHMDILWI*
Ga0129333_1000090837F022862N/AMSLWYYSYTSNNLEMKFTTQQYELICKTRDEIRELNEKQHKLYDDLLKELNISVYAEDWMFDYIYNESGSIDDIEARM*
Ga0129333_100009084F001732N/AMTAKLPILILLVFLFTGCFSTIKPSNPVDDNQKIIAKQEKKVDTTLVEIEKNDKGKRIQTSGLSVGIQHSLNQVTNAPVQVDTALKLNERVISIVGSPHIDETKRIKATVDLLNSALVEERRKGEELLAQRDDIINKLQKEKSELNQKYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFIISALTAITVFIVVFVILRLLATVHPAAGAAFSIFNMLGSAIISILKALTPKAFELANFATHDKVEQFKSPLVKIVDVIQELKEKQKESPDRVYPLNELLKRFDKEMDSDEKSLIDDILKEQKWIK*
Ga0129333_1000090842F009682N/AMKKDLYMKKANENIVIQSDDLKFDGKNIIIPSYYAGVVSDYLANVDTQGMNDADKHDFMAFSSFFEAILDYKNNK*
Ga0129333_1000090844F001840N/AMKEEQDSTFLICDCFSHGLLVEKFEGEEEVSLSLFERGLGGRILSLSERLKWCWQILRYGKPWSDFVILNVENQKRLKEFL*
Ga0129333_100009085F003904N/AMDNLIPNIKKYLLVVLLPTAIFVILALSSLKDIENAFVRFRFGRDITLYLRRSTDDLTYLGAAYTATGDKKFLERFNAHLKERENYFNNEVFISKILTQEELKEFRVGLDISNELAKEVEGPAFEKMDSKAFFSDKYLDYKKRIYLSKEKFRDLINNSSEKIIHDETKLLNVYLYSLVGIVLFLVYLIKHDNPTPIKKKPIKRKKK*
Ga0129333_100009086F014128N/AMEQLQKMGIQIGFLISGLFGAILMATKNAKTDTKSVILSLVGGMSAANFLTPILVDTLNIVNVKHQNGVAFIAGFLGLKLVELVSEKFLEKLNNKPKSKTRKRIKK*
Ga0129333_100009087F056337N/AMSEQYNNNSYDAVLSRMEQKLDTIAENISDIKKGHKDLETRVSGLEYFKYYLAGIVAAVTIGANYLMNKVKNG*
Ga0129333_100009088F011485N/AVSVLASVAVFAADTESTINASINAGYNNHYIVNGLAKTDGAAFAGFDIGKTYYGVDAYVGGVVLPDSNGLDESHWKIGAAKNVSVTEKVTLRFDLQALRHQSSIVGGRNSIEIAPKVSLINPIVTPYIRGSHDFSLDQSGYAVGLERPTDVFGWFTLTPAVEYGKYTDYEVVAAKIGISRTFFNHLQPYAEVGWYDNDFSLTKYKIASSEFSGDIVATAGVRWTF*
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