Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10003944 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10003944 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13908
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (11.54%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

13908

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (11.54%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: Euk_MAG)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: Euk_MAG)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F002985	Metagenome / Metatranscriptome	515	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F025982	Metagenome / Metatranscriptome	199	Y
F040073	Metagenome	162	Y
F041147	Metagenome / Metatranscriptome	160	Y
F058089	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000394410	F040073	N/A	MLKFEMSPEDMFWQEKMIRSINDCSSMSELKEMATLLTKIATQRQIAIKGLVADAMELMKDNYSHKLPAIND*
Ga0129333_1000394412	F002333	N/A	MTTQLQQQELNAAQSLIYTRTNISRAFQDFDDTEIAGIYLRDDNCLVVRRDGSEQAYPRDLIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYTHALGHLTSNAKLQAHWADKFIHVSDPAKITTLLQSDQTDIGHLVAPDGMRLTNRPIDMDSELDDGTEQKPIFGEPTCSCGSFQRQLSNLSDFQEEIQGFKPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWFYAPPKDSISDGRFVLLYTNQGAQAPLTHWRNYKPNEVFTQHHAWDLFFNMMDASYVPFPGTSLPQLKAAVKKQ*
Ga0129333_1000394415	F002738	N/A	MIMSIDSYGLSSEQYTEFFHKNVRFAAKLYLDTCNILTTEGVGNVDFKTVLDMYQEAVYTANDDCRRYQKSNNPDVLKEVTADLYGISPSREELMDEIQSLSAKVESLVDYIGNLVTVTTAGLAGIATTLDDKID*
Ga0129333_1000394416	F013517	N/A	MFESLFAAVLPVMKDLLWAAAGMLLTYVLNKFQTQFI*
Ga0129333_1000394417	F001018	N/A	MAQITQAKLKDLSVIKLYEHYAALEKSLPLLTPESQELAKAELESCADLRSEKVDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKELTVEISTDPEFWHTKERELYCVAEEVTTTKRVVLRSMSGEVLSERTEPKTTTKVLPNLDAIRSAYQEGQQLPHGVKVVQEYSVRSKRIFSEPKLDLVPSEYPGEFLSEDPSAD*
Ga0129333_1000394418	F025982	N/A	MSCHEHAIKDFDLQLEMNGLQMTMLMEEGKVLDYHMSEYEDLEQKKLKLLVGKRFHQNAANAYWYWTQREKAGK*
Ga0129333_1000394421	F008128	N/A	MEPVTVPKLSVSFAIDLELEYNSFGGKTSDEIAEALQDELDDLLFELPNVTGVYTSCTAIQFND*
Ga0129333_1000394423	F041147	N/A	MDTSQEPVDTIKQWQDWYRKHRIVAEIDVPLVTKESRENLHETSNATNSLAEYCIAMSFQKAKEYFADTIAEFANELSGKELYKAFYAAAMDNMDCVEKEYNKAKQLVDMLRCNNVAP*
Ga0129333_100039445	F002985	N/A	MSYVIACWRWGTPHAITANKETNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINSNDEDLACKELSIQDESRFRK*
Ga0129333_100039448	F058089	N/A	MSTQPEDQFTLLYEDGKRKVLHEFQCIGTDEIVDEFINFMRGVGHLELNIIERMYEISKQCLALYQGEPAIRLPLQQDDLEEVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10003944

Overview

Ecosystem & Geography

Associated Families

Sequences