Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10009292 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10009292 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9295
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (57.89%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9295

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (57.89%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002162	Metagenome / Metatranscriptome	588	Y
F002357	Metagenome / Metatranscriptome	567	Y
F028151	Metagenome	192	Y
F037698	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000929213	F028151	GGAG	MNTWLEGRDMGFVIMWAIIGLTFAAWIIHEIRNTAFQNGYWKGRADGWNSHRRLTNTKTKSDEVFDYDKQN*
Ga0129333_1000929215	F002357	GGAG	MAFNLEDYEDVATLNKWFISNFPNGRSDISVISHDPEKGYILVQATLWRDSNDASPAVSNIAFGSRETYMANMKKWYVEDTASSSLGRAIIILKGSNKTATKDSMEIVKADQTFKEKLEVRQNMYGKPGSKSAQIETILRDSFEADKPKDTVAWSVGDVVAEIGASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKQCDAKWAKLTANGKWYFEGGE*
Ga0129333_1000929217	F002162	AGGA	MPNYEYFCDSEGSMIVLDLPMDHKIPHCQVCNARLRRIYTAVPTIFKGTGWAGKLG*
Ga0129333_1000929218	F037698	N/A	MDVCGNGVPYMCDSHDELTHEINWAYQNELHKQWLADNPDAGYIGWMSI*
Ga0129333_100092924	F000468	AGG	MTVWTPEWKLTVAGTEYTNLTISDITHQAGRDDIYTQPNPSYLQCTIVALSGQTFPFDINDSLSLQVKNSAGTYVNLFGGDITDITVEVGATGSIATVVEYTILAMGSLVKLAKEIYNGTISQDEDGNQIYDLLSSVLLGAWNDVPAASTWAGYSATETWATALNLGLGEIDQPGLYTMENRDASPDTVYNIASQIANSAFGYIYEDNEGNIGYADADHRQTYLITNGYVDLSANNAIGSGLRTTTKAADIRNDIFINYGNNFGSQKTATSASSIALYGYKSESIQSVIHSAVDAQEVADRYISLRAFPQPIFDSITFPITNPEIDNSDRDNLLSVFMGMPLNIADLPTQINNGEFSGYVEGWRWSTRFNELFLTINLSPVSFSQVAMRWNSVPIGEAWNTLSNTLTWEYATIVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10009292

Overview

Ecosystem & Geography

Associated Families

Sequences