NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0129333_10034494

Scaffold Ga0129333_10034494


Overview

Basic Information
Taxon OID3300010354 Open in IMG/M
Scaffold IDGa0129333_10034494 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4779
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)39.2637Long. (o)-76.0017Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003690Metagenome / Metatranscriptome473Y
F005531Metagenome / Metatranscriptome397Y
F008132Metagenome / Metatranscriptome338Y
F014129Metagenome / Metatranscriptome265Y
F015730Metagenome / Metatranscriptome252Y
F081245Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0129333_100344942F081245AGGAMIDFVKQLEVNNYLADEQVDPLAKMLDELISKGEYK*
Ga0129333_100344943F015730AGGAGMLTQTTLDKIVYEYQHGGVKGNHPELTTYERKALLKHLFSLPTHCGGCGVNHTDTRG*
Ga0129333_100344944F005531AGGAMTITYSIWQGSNLLSVDNTAKNSEEILSVMAELNKLGKGFTYNVRKVDTK*
Ga0129333_100344945F008132AGGMMTKWDTIQEDIKDAYAHLDDVEELEQEDEEDFLGFSKAIEIDHLTDEQLDMIGEMFN*
Ga0129333_100344946F003690AGGAGMIPNGFELIISNDYGIEFDSFLGAIYLPWHTIAIATALLIAYKIYKRKKNK*
Ga0129333_100344947F014129AGGTGGMTTLKIREITLSNVSADEANLIVCAFCSDYANEIFCGKCNEYKGLMTLGEWLSYTQESWVM*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.