NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129333_10441359

Scaffold Ga0129333_10441359


Overview

Basic Information
Taxon OID3300010354 Open in IMG/M
Scaffold IDGa0129333_10441359 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1147
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)39.2637Long. (o)-76.0017Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010398Metagenome304Y
F018927Metagenome232Y
F043399Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0129333_104413591F018927AGGMNKHIEITRHLTVDGTTTFYVIEKTKNSSSIIWNGTSKQAAYQVAYRNARKENTPLYDTLYKAEFDRNGVKHIIPVGNELLEVSN*
Ga0129333_104413592F043399AGGAMKIPPSSDMLLDDYPIVIWTIVKKNNNYILLDSCGIEVFRRKENRKKEIYQYCEDNGIDYQEEF*
Ga0129333_104413593F010398AGGAGMEISIQGVAKVNYELVIDEDAFNDACEECGLDPANFKKFTKDEWDVLNPHLVRTVVDNEADIDYTEIHVDSAVWADTLTIDDSDNMTTVYYDKNRKIDSVEIM*
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