NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126370_10005574

Scaffold Ga0126370_10005574


Overview

Basic Information
Taxon OID3300010358 Open in IMG/M
Scaffold IDGa0126370_10005574 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6331
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064616Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0126370_100055745F064616GGAMLLLAVFALASCAFGQEIKAEVVSTLVWGEDSPSGATSSIMKDPLTGHAIHKLRYGPIEVSSRIGFERIGPDEVGAYLNYTTTVVNGSDATLSVRYGGISIDGRTVSLPFVIHPGKKLNKRKRKNKADVVEPDKMQCFTSGFLPSDHLFSADVASKTLSVSPKAALTVSSVVLDPRSYPLHCSVEGCHPVGTIRYYLTVNSQDYVFVWPGQSAVYCGK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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