NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0116251_10069629

Scaffold Ga0116251_10069629


Overview

Basic Information
Taxon OID3300010365 Open in IMG/M
Scaffold IDGa0116251_10069629 Open in IMG/M
Source Dataset NameAD_USDIca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2519
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA, Massachusetts, Boston
CoordinatesLat. (o)42.35Long. (o)-70.96Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037746Metagenome / Metatranscriptome167N
F053881Metagenome / Metatranscriptome140N
F070633Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0116251_100696292F053881N/AMTGIIKISRESLGEKERKLYAKLYKNLMESFEIDEIAADQIATALIVQKSILLPRLLSGEDIDISQISESIRKWLSEYRLTPKSKEKEDKVTINLSAIIEEIHRERDNPN*
Ga0116251_100696293F070633AGGAGGMGFLGRAKDRIILDVSNCTSDKGFVCSVRHHFPFSPKKCTGKYNLIIVPLSDGILTSIDREGFKIVMDTEGRLILTRKDGKVQLVFDYDKGFMTGILGGALYETFEIPSHEGTNYHG*
Ga0116251_100696294F037746GGAGGMARVNIEDASANDDVGKNFEANYIPDTTDKQLEEARALMSKLLNKYGSRTALEKDETDWAEYKKAMYIVYSRSKDSMNASMKAKKDLIKRKNLLSQFFEENTDILFGLSEWQRINLRKYTDYGLLFDQEYLWDLLKELGKEDTIKHLANIANYIYLDTGFLGGRREDYVALQKGPARSIYHRPTCKSQKTVRPSCGKD*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.