NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126379_11491213

Scaffold Ga0126379_11491213


Overview

Basic Information
Taxon OID3300010366 Open in IMG/M
Scaffold IDGa0126379_11491213 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)782
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018402Metagenome / Metatranscriptome235Y
F067490Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0126379_114912131F067490N/ARLFINEAHTGVMAWWSMGRWTDRAAREAIIAHAMTMTLADFRRWFARHAASCLVD*
Ga0126379_114912132F018402AGGAGGMAASEHHEADELDLAAGDFWVQIESSPGAGPLWERSLNVSTSGNVANGTILTTLLFAYIGYHERLLAHHQCGNPDCRLVWGHRHVLGLLETALEQTAQLMDGCDEEPESDAEEDQAE*

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