Scaffold Ga0129336_10054472

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0129336_10054472

Scaffold Ga0129336_10054472

Overview

Basic Information
Taxon OID	3300010370 Open in IMG/M
Scaffold ID	Ga0129336_10054472 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2387
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003038	Metagenome / Metatranscriptome	511	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129336_100544721	F003038	N/A	VLKINSIELEEFKFIPGAYHLMMHVETQPIEGFEGFMIDKDDESKGRYAGQIGRVKASQYAFADGETKSGVKIQRDRSILIFLRTLAHTLELDSWFVEQDGQHETIEDFVKAFNKTADFRGKYLEFCVAGKEYEGKSGYTNYDMWLPKAEGKKYAFGAVEGGVVIPYDETKHLKKLEVKEVKSFGDDDDVFTSPKTSSDFSLD*

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