NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0134128_10183605

Scaffold Ga0134128_10183605


Overview

Basic Information
Taxon OID3300010373 Open in IMG/M
Scaffold IDGa0134128_10183605 Open in IMG/M
Source Dataset NameTerrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2360
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Kellog Biological Station, Michigan
CoordinatesLat. (o)42.3938Long. (o)-85.3708Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071506Metagenome / Metatranscriptome122Y
F092591Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0134128_101836052F092591AGGAGMKFFARILFVLALTGSLLAQQPTKDTADQPAKDQPQKKEVLAGREGMTGNFFKLAFVMYELEDGKRTNQRDYMMIGRTDNQPSSIRVATKIPITTEEKGNDKSYTYTDVGLRINCSMKEQVDSRMQLHCDIEMSSLVRPEQIANATGNTGPGVPVLRSTRTESWALMTPGKPTILTTVDDINSAKRLQIEVTATKVD*
Ga0134128_101836053F071506AGGAMADQENDKQINDMLDSLLANYSSAEPRPGLETRILANLREEEKKAPQGWWNFKWIWAGVVAAAIIIAAALIGGRHQVEQPTNTVVETTQPAPQQQVQPHAPVPRNETVRIHRRKPSAIPTVRHDAALALKDRPAVFPTPTPLSEQEQLLLRYYAGTPREELIAQSHPDEPPVVGDQDQTEAIPDLIHIPQKLSNTR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.