NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105239_10587531

Scaffold Ga0105239_10587531


Overview

Basic Information
Taxon OID3300010375 Open in IMG/M
Scaffold IDGa0105239_10587531 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1270
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005278Metagenome406Y

Sequences

Protein IDFamilyRBSSequence
Ga0105239_105875312F005278AGGAMSRHKYELTLAPALALVIIILTAGTSDGQSPLSFHAGQSVYIVAFRTIEFPIILDETPVDRQRQHINNDLDAERKVRKRIEEWQFFKVAEKISDADFVFLVHLDESSMEGLAIPVDAYRQYFKDKFDLDALRDAAFGRYLIGPLKLPTITRLSDRLVKQFREKVGKPSH*
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