NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126381_100020699

Scaffold Ga0126381_100020699


Overview

Basic Information
Taxon OID3300010376 Open in IMG/M
Scaffold IDGa0126381_100020699 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7688
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043570Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0126381_1000206995F043570AGGAGGMAKKIREFMTHRDPDEHIWVERDESAVIGTARMGQRLVPKIRPFDLLRNAPRFGNRTQVMIWEGDTLRIAAENLVGTEEQLTRASDHDLIFFQFCGRSTIESECGVVELEPGEFVLIPAAISHRSTGKDECLRVRVATRELVNLGVDPEKPLVETKFKVRPSEPFTPQSNGRQDAQAGHVLEHITFWDPQSDVWIERDPTALIGTVTDGSRPFKKIRGFDYFSGMTGKGGAKAPVLYNGKEFRIDVYNLEEEQRGFHRGCDEDEIWFQFRGHSLNHTEWGAMELDAGQTAMIPRGIAHRITGSPGFLRMVFYSRGLVQPKAFNNVTERETKFEVQ*
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