NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126381_100052470

Scaffold Ga0126381_100052470


Overview

Basic Information
Taxon OID3300010376 Open in IMG/M
Scaffold IDGa0126381_100052470 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5000
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003352Metagenome / Metatranscriptome492Y
F005719Metagenome / Metatranscriptome392Y
F036640Metagenome169Y
F080305Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0126381_10005247010F003352AGGMVKILMLGCVVAAIAITLKVRLDTPQGPQPLARAIVTTHLQQLRDELALP*
Ga0126381_1000524704F036640GGGGGMNLSASLAVLALSLAFLFFGRGRNGNALPIFQKSPWIVGVLFSVAILYLFLAGLMGVAANLHWL*
Ga0126381_1000524707F005719AGGMTIYLTRDEIWFLKALRAAGGRGRLVSAPASRTGLTRLVEVQYVAKHPQSERNTLYVITDRGRRALADAPQG*
Ga0126381_1000524708F080305N/AMLNNHTQEICECYQQAAHCVQQAEAQTDPKVKKQFLELTRRWLLLARGYVVDKSSDD*
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