NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126381_100968314

Scaffold Ga0126381_100968314


Overview

Basic Information
Taxon OID3300010376 Open in IMG/M
Scaffold IDGa0126381_100968314 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1227
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047817Metagenome149N
F070613Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0126381_1009683141F047817GGAGGVGTVRDALQLPDMRRIELGYGLSITGELAGTVALVVYALSVGGAALVAVYAASRTLAGMGVALVL
Ga0126381_1009683142F070613N/ALPAEGPTFLFLDRAGDTFYLGIASSHWGWGQLLAARDLDIFPKCAPGVLDLAAFRPEGMFPFPILGASQVKLVRDGEEAWYLLGFRSDPDDDPNGTDFVDVYGVRFDPFAITPLLFSVHVIFKPGDTGFASTGTHHVEPSGRLLLSSSYRWANDEGPGDSSYVSRVDECPSL*
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