Scaffold Ga0136449

Basic Information
Taxon OID	3300010379 Open in IMG/M
Scaffold ID	Ga0136449_100000828 Open in IMG/M
Source Dataset Name	Sb_50d combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010379 Open in IMG/M

Scaffold ID

Ga0136449_100000828 Open in IMG/M

Source Dataset Name

Sb_50d combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	90722
Total Scaffold Genes	74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (60.81%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

90722

Total Scaffold Genes

74 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (60.81%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.1318	Long. (^o)	11.881	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.1318

Long. (^o)

11.881

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014894	Metagenome / Metatranscriptome	259	Y
F036810	Metagenome	169	Y
F041733	Metagenome / Metatranscriptome	159	Y
F045057	Metagenome	153	Y
F045709	Metagenome / Metatranscriptome	152	Y
F070426	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_10000082810	F045057	GGAGG	MRDTSIREYLNQKQWDRIFYRCPGAWAGNKPEPNQAGTIVIDGGNILAAVQYLNQQRLRVLYAKAPLPGIWCSDDGIILGIGLRR*
Ga0136449_10000082815	F014894	AGGA	MSIGVPGFSIYFEHHQVKPFIKDHSKKAKDLLNERVVPAVLRGTCKALEVVANNTADAHDYLISKMKSKQAA*
Ga0136449_10000082816	F045709	GAGG	VNLTPSQKGSFLAGVGLWVLIWASVWKADDLAEAMRIQRWFNANRCLRWIGQHKSTSLLGTELINYGTHGLDPLGVSFSLGGTLVNVLFIYLFLPCLERLLHQNGTASTTLQ*
Ga0136449_10000082817	F070426	GGAGG	MILELILAAEASAFSASWIRRSRVRRQEIMLGGSPSEINLPFLDQYLRQQTANPTRLQTFAAQRLTAVCRRAVHTGAFELLVLKLIQSASRRYRRESEISKVEVIL*
Ga0136449_10000082818	F036810	N/A	VKLISLFHFEPTRSPYIQNPITKEIEMSLQLSQGTCVSTPAVWLARATAKCRAIQLSIERRSFERKLETIVRAANAHHSCGQSPGASQFKLLRKSADDLCASFAQRWDISPELLEAQIPALAKLRSLANPPTKPEPLVLVSLGVVGAVALFFLMGVLAGLASVGYHLIGGR*
Ga0136449_1000008289	F041733	AGGAGG	MFAIKPDGKKKITLTDLLICGVLGAAWLPLGIAAAAGIGGYMYLQNKTEEYRRNHPEEVKKLKAS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136449_100000828

Overview

Ecosystem & Geography

Associated Families

Sequences