NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0136449_100020919

Scaffold Ga0136449_100020919


Overview

Basic Information
Taxon OID3300010379 Open in IMG/M
Scaffold IDGa0136449_100020919 Open in IMG/M
Source Dataset NameSb_50d combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16696
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001565Metagenome / Metatranscriptome670Y
F001851Metagenome / Metatranscriptome626Y
F003322Metagenome / Metatranscriptome494Y
F010024Metagenome / Metatranscriptome309Y

Sequences

Protein IDFamilyRBSSequence
Ga0136449_10002091913F010024N/AMNNNAVRCDMTDKSESSFAVIWFNERTYQSAGVVAVIKGIEAAQRTLNDFDWCQSGENRRAGWRYFLEETDLRPGTNPEKATALRQVKLDLQESQA*
Ga0136449_10002091915F001851AGGAGMSATSISFVLIIAVFTILLLYRMHRLKPHIAGFRSQRMCPACGLITSRLKTCCLECGKSLL*
Ga0136449_10002091923F001565AGGAGMRTGISKSPDSRYWRQLYRAALSEIDKSKLPERIAEAERAVVLRARELFQAGGDNGEETEALDDVMYALHALRSNHPNLGVS*
Ga0136449_10002091924F003322AGGAGMVCEALDQLEWDFIQVRAGSLDIDSLGWTDREFSCLVAILDHKREGHQGERCPGD*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.