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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010379 Open in IMG/M |
| Scaffold ID | Ga0136449_100150800 Open in IMG/M |
| Source Dataset Name | Sb_50d combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4561 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella arctica | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany: Weissenstadt | |||||||
| Coordinates | Lat. (o) | 50.1318 | Long. (o) | 11.881 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F040984 | Metagenome | 160 | N |
| F046150 | Metagenome | 151 | N |
| F053027 | Metagenome | 141 | N |
| F057847 | Metagenome | 135 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0136449_1001508002 | F046150 | AGG | MYTTSGAGYRNVNQGPQKVYLCPCGEIMIPPNYASGVPAGSERDLFVQSLKLAIARRNSTTLDQVAQGTVSLAEHNKLKAQFEELAGRFNTWAGGGEMPEPVELSAEGDEETQEQEPAPAPLQLTMRELGAKPPIATGTQGRSVASAVQAIGDHKEVTSTPAPIYTGGARERMKRQGGQ* |
| Ga0136449_1001508003 | F057847 | AGGAG | MPETLPIFMKGERKPVNCFRDAEGFLVIDAVLGDDDLTVVSPDSGEERFRITDGEVTDLRPHKHEWNVDSYCTVCHKSKQQINEEQDEQTHPTAVE* |
| Ga0136449_1001508004 | F053027 | AGAAG | MLLTERQIDLRLKCPMFGMEDKHGPSSYECAQKLLRWAILNAFKGRLVPVATLRGKFESIWNGHTAGWAPDHQPAYYAGLRAGNTAARKIFLFLQHYEVLKPVEAYGVDLAGDRIEGEYAVVLRRHDRRTDERPMILQAHEWRPAYCQQPGAVELIRYVHLMGATDYTSPGVYHLPLFRGEPWKMKDFDLPLVRKAVASILNAIRNIDHPVPGSHCEDCSGKSCRSLAHA* |
| Ga0136449_1001508006 | F040984 | AGGAG | MSTRHYKVEFDPTFFGGDYAEQGNQALIPEQMVEEIGMSAAFLKTTGHNPANIIHYAEDLRFNTDGTLCTDEPAIDTATDSTVEMTTAGTVQIPTDEPVQLPGPTVIEIGDQPAQIETESRDVPRLSRRKQAA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |