Scaffold Ga0136449

Basic Information
Taxon OID	3300010379 Open in IMG/M
Scaffold ID	Ga0136449_100167373 Open in IMG/M
Source Dataset Name	Sb_50d combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010379 Open in IMG/M

Scaffold ID

Ga0136449_100167373 Open in IMG/M

Source Dataset Name

Sb_50d combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4265
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4265

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.1318	Long. (^o)	11.881	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.1318

Long. (^o)

11.881

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006278	Metagenome / Metatranscriptome	377	Y
F006399	Metagenome / Metatranscriptome	374	Y
F010114	Metagenome / Metatranscriptome	308	Y
F017965	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_1001673731	F004823	AGGAG	MYVTKVVNGVPAIQRDGQSVLSVCDQNWDFANWLCALLNELGHKSELLLNEHDQEWLKAIDSPFRRTVQHV*
Ga0136449_1001673733	F017965	GGAG	MSKNTGHRDPLYLFVCHLEWHRRGNLAACQELLAALDDRDSDILSVAEALLHRSSPHGKLTEKTVEAW*
Ga0136449_1001673734	F006399	AGG	MATSTLSSGVQSTVAEYGTFWQLWPQFEQAGGERRLVGFEVELIGSHTSDLNHVDPACPTCRHVRSVLLAIADLMPGELTLSRNSLTYNIDSHSNSIVCLPALGNRSAVWVSIYVFLNEPNGQSFETDLLNEIKNFLNRWGIHQR*
Ga0136449_1001673735	F006278	GAGG	MFRAEIQWLASGPTLKLEGKLVADWAEQARYLVTKDVLPKGLIVDLTEVSYIDSAGEQLLKWLASVGALFVAGSVYAIAVCDRLGLSPMQRIAERRKRRHGNNEERSSIRHSHPEAI*
Ga0136449_1001673736	F001596	AGGAG	MSWFHVSTAAVDARNHASPAEIVACFQDQRNVLGRLAFLITGDQATAEQAVVQACEMTIQGNSPFRDWLFEWAKAATIARAISHGTEAIRICETAYKDRRCPHGEHLSQGGVEERAADLDLILGTDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNASRAAVLGANCHAMTWLHDGHVKVAEENRDAAHAV*
Ga0136449_1001673737	F010114	GAGG	MLIELNDDDSRLLYAVLLQQAQEHFSYVSTSEVAEKLCKLATRFKRPSENKT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136449_100167373

Overview

Ecosystem & Geography

Associated Families

Sequences