NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136449_100171357

Scaffold Ga0136449_100171357


Overview

Basic Information
Taxon OID3300010379 Open in IMG/M
Scaffold IDGa0136449_100171357 Open in IMG/M
Source Dataset NameSb_50d combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4200
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000321Metagenome / Metatranscriptome1304Y
F000673Metagenome / Metatranscriptome944Y
F002076Metagenome / Metatranscriptome596Y
F013723Metagenome / Metatranscriptome269Y

Sequences

Protein IDFamilyRBSSequence
Ga0136449_1001713571F013723GGAVGAGKTTFYEAYLKEAFPTLVPPLRHQQQPFLDGRRSLAVEDIRVDTQLLDQAKAAGFSTKVL
Ga0136449_1001713572F000321GGAMGELSTSVNDALLAVDLNTVELVTLQSRQKQTGRETQVVILNRLRKRIHQVAKKRNCSMNQLVNSALLAFYSKGGETKLKKSTKGRGSSLRSYDTMSDSERRELHQMLAEVSTMQSVPFEAEEPNGSYYEYDRNLKATVKVTPDGERTPVEKLETSFGKTPRKIAHEEIAS*
Ga0136449_1001713573F002076N/AMEHFRQCLNRLAATPSRRKAALIRSLLPGIGAALRCGHCFKEIWVALEGEGLQMSYRVFHKTVSRSRNAKKPTATSIWGKLDKPLEAQARQGTKVEAVEERDPLANLRRLEPEARPGFHWRGIRNVKTPVQGTEDSNDKNNR*
Ga0136449_1001713574F000673GGAGGMATKPRTERSLLFPSKEFREKVREASKNRGFRSEQAFILAACENEIRRGDNDEAATQFEARVAATLANMAKQGQSLHTLAQAQVALIDVLLKYVITCVVEPPEDALPAARVRARLRYEKLVRAAAEEISNKNRETLRKMLGED*
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