Scaffold Ga0136551

Basic Information
Taxon OID	3300010388 Open in IMG/M
Scaffold ID	Ga0136551_1000324 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010388 Open in IMG/M

Scaffold ID

Ga0136551_1000324 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14051
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (81.58%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

14051

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (81.58%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location Name	Jussy, Geneva, SWITZERLAND
Coordinates	Lat. (^o)	46.25	Long. (^o)	6.28	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Jussy, Geneva, SWITZERLAND

Coordinates

Lat. (^o)

46.25

Long. (^o)

6.28

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F002515	Metagenome / Metatranscriptome	552	Y
F002598	Metagenome / Metatranscriptome	544	Y
F002935	Metagenome	519	Y
F004840	Metagenome / Metatranscriptome	421	Y
F011487	Metagenome / Metatranscriptome	290	Y
F021757	Metagenome	217	Y
F045756	Metagenome	152	Y
F066779	Metagenome / Metatranscriptome	126	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_100032414	F011487	AGGAG	MANMYESVSDEFYDEYYSTVCPSCKENAVDAYEEKCTHCLLEEMSATYNEDIALEMSLGLEY*
Ga0136551_100032415	F002515	N/A	MKKTPEELRRLMELRRSNAASAVPSKKAYTRKGRKCQSEMLQLKYKNH*
Ga0136551_100032419	F004840	AGAAGG	MDYEYVITSAYDGEEPHWTQRYELEYGAWENFFLFTDWGMANEYRTVNLYTPTGKCYTKLFYRDGRVVVK*
Ga0136551_100032422	F021757	GAG	MMTRKDYVAVAEILSSYKDGMVDEFWFADLVLDFAGLFAEDNPNFKEDKFREACGI*
Ga0136551_100032425	F002598	AGAAGG	MATKLYTIESLLVGKHYRSRNRYFQGEIISAEKRDGIWYGENTEAYLIEINAGGLRNQFATIAVKVGE*
Ga0136551_100032426	F045756	AGGAG	MTKYNVIVSYVCEANDELSAIFALNKTLMPLSENELEKFNAFHVEEVQE*
Ga0136551_100032432	F066779	AGGA	MFSLKYTIEYNTDPAYPLSKNFGTCLGYLVETEEQANEALDLLALRGTILTVSLDEIKDYKPSKRVVYATTRSWE*
Ga0136551_100032433	F093845	AGAAG	MINVTLTSTSGTTKGMKFDTKENVLEFVKQYGKVLPQGTAVCIDAPLIGIHSGWIQGQA*
Ga0136551_10003246	F001507	AGGA	MTTTYKPYTIAELVETIYEDNFSHFDFMENMNGGDCDCHLHQTMNTIVKYWGE*
Ga0136551_10003247	F002935	AGGA	MRNRTKGYVGQIVDGKKLATIANAIYDLQYSGGASSCTVDNLLLITLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTDQTEDISEYIRVFGDRLDNNCYLWQSKMSVVKDMIEA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136551_1000324

Overview

Ecosystem & Geography

Associated Families

Sequences