NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136551_1001072

Scaffold Ga0136551_1001072


Overview

Basic Information
Taxon OID3300010388 Open in IMG/M
Scaffold IDGa0136551_1001072 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7202
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura atramentaria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location NameJussy, Geneva, SWITZERLAND
CoordinatesLat. (o)46.25Long. (o)6.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008023Metagenome / Metatranscriptome340Y
F012098Metagenome / Metatranscriptome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0136551_10010722F012098AGAAGMPKVHNIGPVFVQVTRFPYEWGNKLVVRGWSQEIEEPYRTATPFIVRLPKYHGLVLGKWGAMKEEEEALSGALARREVTYDDFTEEAGWTPAADSNREASVEGLYSRFDLMDGAVNVYDRQEHLIVAETPERG*
Ga0136551_10010729F008023AGGAGVANTPVSPLDATGRAKEQATKKNAAELKKRAEEISIATQLEAESLEKDVFDPKNPDAPLVLDEIENVGVSTAGDMVVIRTITDIEDMTYGVGNTFTFKAGVKYRVP
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