NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136549_10005499

Scaffold Ga0136549_10005499


Overview

Basic Information
Taxon OID3300010389 Open in IMG/M
Scaffold IDGa0136549_10005499 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9024
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (19.05%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameBaltimore Canyon, US Atlantic Margin
CoordinatesLat. (o)38.05018333Long. (o)-73.82193333Alt. (m)Depth (m).12 to .14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036202Metagenome / Metatranscriptome170N
F043371Metagenome156N
F061821Metagenome131N
F071198Metagenome122N
F105098Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0136549_1000549918F071198N/AMKNTLGNLACFLIAAAGFAFIGYEATAHHGSTHSGTQPYIKVTPECDK*
Ga0136549_1000549919F043371GGAGVTTNITTPQDLIDALLQIREERDELNAREAFLKEQLEGAMALGELDPNETSDGVYQFSNAKYSRIERSTFKLSKEAQKAIDTIKEKDIDSGHAERKLTIFYRLDSQV*
Ga0136549_100054995F061821N/AMTRIAVKVYLTPDETEHLDRQAEALNLNRSQLMRLRALGDPAPGVQPHSPTITLKRYQSAVTAALKASNGSCSRPIVEAITAAVLCSVHETPNKQPSSNPSQTVG*
Ga0136549_100054996F105098N/AMPTQRLTRLSTEEGARTILRRMIDAGRCTVEDLDKAPPGHINPQAYRNLMRDIAPEPRVEVVSPRDLPTKTPEEPLPF*
Ga0136549_100054997F036202N/AMLPLFDYANRGKCVHQVFDNKERISPKNVYRIATSAMFSETELGEVRFHYSPVNSEHAIGMYDKEGYYCTYCPPIPGAAGSRALGRWVRHPWAEEEHQRLEAFD*
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