NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136549_10006858

Scaffold Ga0136549_10006858


Overview

Basic Information
Taxon OID3300010389 Open in IMG/M
Scaffold IDGa0136549_10006858 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7982
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameBaltimore Canyon, US Atlantic Margin
CoordinatesLat. (o)38.05018333Long. (o)-73.82193333Alt. (m)Depth (m).12 to .14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051938Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0136549_100068583F051938N/AMSTDDDIIEVAGSAPAPSKKATGKTTVLDQLKMEISKEVTRPEIEIPVPERRGVTVRFSPNITNEQLKSWRRNSTNKKSEELDSIKFSCYVIGQTVTGIYFNDELVTDDDGNAITFASPVMLEMTDTDRPLPDAIRAFYAVDPHLESTALKILDHAGYGDDVDAEDPTKG*
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