NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136549_10020600

Scaffold Ga0136549_10020600


Overview

Basic Information
Taxon OID3300010389 Open in IMG/M
Scaffold IDGa0136549_10020600 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3963
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_47(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameBaltimore Canyon, US Atlantic Margin
CoordinatesLat. (o)38.05018333Long. (o)-73.82193333Alt. (m)Depth (m).12 to .14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028966Metagenome190N
F044811Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0136549_100206002F044811GGTGGMWHQWIGLPHKFRADPRKGIGADCLIMVWNVLEDAGAPHPRLDPTWLDLAEWGRHRLLAQTYKELTMPLDAPEEYAVTLFSTARTIGIGIVVDGGLLHVHHRRGVQWMPLDRCKPLEFRKFT*
Ga0136549_100206003F028966AGGAGMSAYAFVNYIRCKTQADAYIGTPYQNFSINQTRTYGGVTYSFAPFAISSGGGARGGDRSSASLVAGTDAISVNLFAEAVQNRYMLEIKTVSLDPLTFADEALVASEIWRVASYDMDTTRVVLKLTSPLDAVKAQVPRRTLSTALVGALPTSGALVVS*
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