NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136549_10076424

Scaffold Ga0136549_10076424


Overview

Basic Information
Taxon OID3300010389 Open in IMG/M
Scaffold IDGa0136549_10076424 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1637
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameBaltimore Canyon, US Atlantic Margin
CoordinatesLat. (o)38.05018333Long. (o)-73.82193333Alt. (m)Depth (m).12 to .14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011403Metagenome / Metatranscriptome291Y
F011589Metagenome / Metatranscriptome289Y
F067803Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0136549_100764241F011403AGGAGMAIYNVSAGSEAVLHLSATSADEANVSANALVVLSMQDITVNNSTGVFRWKTLDNTAENAATTPATNQISLNCVVDSNVFFGTGTGGDDDAKENGLFGVSKDKTKVYFNVYFDGTDTGSKFIAGSGYVSGLAPTVNMDAPV
Ga0136549_100764242F067803AGGAMAFRDTLKANLDVALASTNVSVSAELPFSSAGEPLYTKNMKHVYLDEDNISKTQLFSTLDKSDVMQTDTTVTAYLAVDAKNDLSDIDTVVASILNSRNAVTGQTVNECEMETDITDDILTYTFNFNFITV*
Ga0136549_100764243F011589AGGAMAFVISGGAVVTYAEALDVKDKDQRVFEANEIDFTNVPDNPGSLDNYIEDLCIKATNRINEKIRMSARWREYLGYAGAGYDSIDNIPAFEGIKIKAKQSTFTDMTAYYVLKEYLLPKIADFGNPESSEVQKIQYYXXXXYYENKFNDLFTELTNVFDYYDSDGDGTVEDGEKMVRFSRTRRTRGRKAVTRIR*
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