Scaffold Ga0136549_10235137

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0136549_10235137

Scaffold Ga0136549_10235137

Overview

Basic Information
Taxon OID	3300010389 Open in IMG/M
Scaffold ID	Ga0136549_10235137 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	783
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location Name	Baltimore Canyon, US Atlantic Margin
Coordinates	Lat. (^o)	38.05018333	Long. (^o)	-73.82193333	Alt. (m)		Depth (m)	.12 to .14
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F105080	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136549_102351372	F105080	N/A	MSDNRPTLAEGFANAKQYEGKKVVDVLNNISRRNKGSVGGEFEKKIGIPRSSERCDYRDGGDCKTLKFKNNKPAECCDIIMLQDILHEAMNNVPFYESAVYEKIQQVHFAPINKDGEIDEWTFGENFVISKDTHPTLYNQMEKDYNHITERIRTLVNSGQHISASDVNQRSAVKILEIRPKGAGGGANRNTWNGVVI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.