Basic Information | |
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Taxon OID | 3300010394 Open in IMG/M |
Scaffold ID | Ga0126341_1182158 Open in IMG/M |
Source Dataset Name | Coral microbial communities from Florida Keys, Florida, USA - Orbicella T D metagenome |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 563 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Pocilloporidae → Stylophora → Stylophora pistillata | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication |
Source Dataset Sampling Location | ||||||||
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Location Name | Florida Keys, Florida, USA | |||||||
Coordinates | Lat. (o) | 24.6669 | Long. (o) | -81.5441 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007159 | Metagenome / Metatranscriptome | 356 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0126341_11821581 | F007159 | N/A | MVFALVASWLVRSSPDRAVWVRVLAGDIVLCSWARHLTLTVPLSTQVYKWVP |
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