Scaffold Ga0134126_10046805

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134126_10046805

Scaffold Ga0134126_10046805

Overview

Basic Information
Taxon OID	3300010396 Open in IMG/M
Scaffold ID	Ga0134126_10046805 Open in IMG/M
Source Dataset Name	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5425
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Kellog Biological Station, Michigan
Coordinates	Lat. (^o)	42.3938	Long. (^o)	-85.3708	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008041	Metagenome / Metatranscriptome	340	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134126_100468058	F008041	AGG	MHSLFESAEFGIPTQATATIIFICPYDTQLQKVHFAIRRLLRADYHVVAYQTTTAVFSAADPMILPELIAQVREDIKSRIAKLTAAGVTEFGFFGSSLGSFILYNCIGHKIPELRWGVFNTGGNIALGLWNMASLRQLHVARGWSLPRLEEEWAQLQWPDFGRLDGCRFVFASSRRDTIAPLANISHYVGPMLRAGAEVRVCEVPAVSHRTTVIVGLWKAPQLVRMVRRPQPAR*

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