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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010399 Open in IMG/M |
| Scaffold ID | Ga0134127_10109418 Open in IMG/M |
| Source Dataset Name | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2437 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Kellog Biological Station, Michigan | |||||||
| Coordinates | Lat. (o) | 42.3938 | Long. (o) | -85.3708 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003590 | Metagenome / Metatranscriptome | 478 | Y |
| F041356 | Metagenome / Metatranscriptome | 160 | N |
| F096140 | Metagenome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0134127_101094181 | F096140 | N/A | MRIAAVLIFALVIIHGTAAAQSESSEIAIAPLPEPSDYVTLISPYSDFEAIRKGVAQPTTQTFSLSLIPKWFDLKAFYIEKQQPATSSTYSDLGANSATSNLGRYFDILASSSHFDGKVVGEGELAYSTLGFSTAPDDRPTMSRLGLRGSWNKLSYGLS |
| Ga0134127_101094182 | F041356 | GGGGG | MAVVKSGDFAAFGVAGLLLALVLVPLGMSRIQGAESQSIRRSDLPSIELPQRPPTVGKSIPLNIHGMSLGTAVVYNNRNIGTPGDYLEFYNPTGNLIAVIWFDRFGIRRAAVDRSFLRGKNQPEGVFVPVEDGELI* |
| Ga0134127_101094183 | F003590 | N/A | YGMQFRAGDPPGRCHFPWGRCGVFNGDGEANGEIYLSCVQGVAGMLAEPMRWKVKDSIITEVDGGGEVGEECKRLFKEVPESNRLIEIMFGYHPKASAQHGIADPMHWELISKMPWAGLGTPRKHPNFRHMDGSVFNARLYIDDRLIVDTHGMLDRALLHHPEVLEVASQFGNPYQVLAPVSHEAHGSGSAW* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |