Basic Information | |
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Taxon OID | 3300010401 Open in IMG/M |
Scaffold ID | Ga0134121_10000001 Open in IMG/M |
Source Dataset Name | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 398847 |
Total Scaffold Genes | 428 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 261 (60.98%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Kellog Biological Station, Michigan | |||||||
Coordinates | Lat. (o) | 42.3938 | Long. (o) | -85.3708 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005789 | Metagenome / Metatranscriptome | 390 | Y |
F032367 | Metagenome / Metatranscriptome | 180 | Y |
F064701 | Metagenome / Metatranscriptome | 128 | Y |
F090229 | Metagenome | 108 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0134121_10000001168 | F064701 | AGG | MRLEEGRPGGVAPALVPIALGNPLRVGGGGIPSGPGRTLYYSMRHRTQLYLDEGQYRWLKQRAGEAGSIAAVVRELIDAERARRLDATEDPLLSYLVSESPGKGRERTSVTSLDRDLYGR |
Ga0134121_1000000133 | F090229 | N/A | MPLEGHYARQTTPLYKLSSREIKAALVALLVTVVAMLGVVFATVGNSNPPTPRGCIHAEVAGIVGAEIISGCGAEAKAKCAHAALFDSPRANTVVAECEQQGVKF* |
Ga0134121_10000001343 | F032367 | N/A | VGRKKRDIKQFRQACKEVGLTVRERYEASEALHAEKLSGSVQADMSYGELLDWLRQWKG* |
Ga0134121_10000001344 | F005789 | N/A | MRGTIVDARIAYPEVLHIEVKDSAGELWKLATQDAEWSPSDPAELVGRSVDDADIDGETGELRCRLSDGSLLDVKPAAREGEDDPPNWELITPGGVVLEFGPGVRWQIGSADSLPLSRP* |
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