NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134121_10000001

Scaffold Ga0134121_10000001


Overview

Basic Information
Taxon OID3300010401 Open in IMG/M
Scaffold IDGa0134121_10000001 Open in IMG/M
Source Dataset NameTerrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)398847
Total Scaffold Genes428 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)261 (60.98%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Kellog Biological Station, Michigan
CoordinatesLat. (o)42.3938Long. (o)-85.3708Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005789Metagenome / Metatranscriptome390Y
F032367Metagenome / Metatranscriptome180Y
F064701Metagenome / Metatranscriptome128Y
F090229Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0134121_10000001168F064701AGGMRLEEGRPGGVAPALVPIALGNPLRVGGGGIPSGPGRTLYYSMRHRTQLYLDEGQYRWLKQRAGEAGSIAAVVRELIDAERARRLDATEDPLLSYLVSESPGKGRERTSVTSLDRDLYGR
Ga0134121_1000000133F090229N/AMPLEGHYARQTTPLYKLSSREIKAALVALLVTVVAMLGVVFATVGNSNPPTPRGCIHAEVAGIVGAEIISGCGAEAKAKCAHAALFDSPRANTVVAECEQQGVKF*
Ga0134121_10000001343F032367N/AVGRKKRDIKQFRQACKEVGLTVRERYEASEALHAEKLSGSVQADMSYGELLDWLRQWKG*
Ga0134121_10000001344F005789N/AMRGTIVDARIAYPEVLHIEVKDSAGELWKLATQDAEWSPSDPAELVGRSVDDADIDGETGELRCRLSDGSLLDVKPAAREGEDDPPNWELITPGGVVLEFGPGVRWQIGSADSLPLSRP*
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