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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010412 Open in IMG/M |
| Scaffold ID | Ga0136852_10013794 Open in IMG/M |
| Source Dataset Name | Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Beijing Novogene Bioinformatics Technology Co., Ltd |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8749 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment → Mangrove Sediment Microbial Communities From Mai Po Nature Reserve Marshes In Hong Kong, China |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mai Po Marshes at Hong Kong | |||||||
| Coordinates | Lat. (o) | 22.0 | Long. (o) | 114.0 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002045 | Metagenome / Metatranscriptome | 599 | Y |
| F032658 | Metagenome / Metatranscriptome | 179 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0136852_100137943 | F002045 | N/A | MAKEATKINFFCVYCKTRKKIDKYMKVNAIKNKYIIDINKIVSEEEVDFNDDKTYLKILIFNKIQQAIDKNKDIYYIPDFNNEFSIEKLLNLKKILGDNNFNVLIFYNEFRKNPEVIDDVFSNLSKFNASQIIRDY* |
| Ga0136852_100137946 | F032658 | N/A | MRINQFINFQSVNEEASPRLPKSEDYWIKKGKDGKKVALYTHDDLDGIMSAIEMKKYLLNAGFTIEKYGILNYSEGWKYTTLDPSLINIVLDFANMPGDERDEMVDYYLDHHGLFTADELEKYKSSPVQKKKTGSAYEAICQALGVAQDEMTVSVIDMVDSAKYQDYGVSWQRLLDFNLSEIKKSDKRRLEFAAAFNQFIKRSDTKTVISVIDNCEDASIYSIYNTMKRVHPEHNVVMGGPRKGQKKEFLSDSAWRLGEMQKRTRGTNPYKNKYTSQAEFVAKFGVNGLIKLDGYQIIGNLAFVPTGTWANALRARTIIEKDFMEGRIKEEPKFILLQYGGTLQVCSYKKMEEMDDLPKLRSGEVVNDLGKYMTELLTNFQKHLGYHNPDTSLGQDEITVSGGHGGIGSISNVFGECEVEPYVGCRYIDMFKNKIITDLSGVAFNLRLKWSEPAEEFAPREPEMNNKVIQAKDVTKLDKQGNVIKNFENFNKKTN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |