Scaffold Ga0136852_11929054

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136852_11929054

Scaffold Ga0136852_11929054

Overview

Basic Information
Taxon OID	3300010412 Open in IMG/M
Scaffold ID	Ga0136852_11929054 Open in IMG/M
Source Dataset Name	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Novogene Bioinformatics Technology Co., Ltd
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	557
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → candidate division BRC1 bacterium SM23_51	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment → Mangrove Sediment Microbial Communities From Mai Po Nature Reserve Marshes In Hong Kong, China

Source Dataset Sampling Location
Location Name	Mai Po Marshes at Hong Kong
Coordinates	Lat. (^o)	22.0	Long. (^o)	114.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070586	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136852_119290542	F070586	GGGGG	MNPREFSIDPADYGLPTREELVDYRIWDNHLHGFAAKSPIEQYERNQFFVERMGIERSIAQEVGGT

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