NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118733_100265894

Scaffold Ga0118733_100265894


Overview

Basic Information
Taxon OID3300010430 Open in IMG/M
Scaffold IDGa0118733_100265894 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3391
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location
Location NameAtlantic Coast
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099319Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0118733_1002658945F099319GGAGGMVASRPKHNRQSILALKEMAHVQEALVASAEAQQRMGKEFDIFRPIRETPLSVFFDSTHPNGFEEGRINPNLPTIWKHRYGIRMGDEARGNMRIGGKELKETVSVPNSLSALKIADEILEGAEPWSEWKQYARLVDMDAPKVNVPLTKYTDTVGGNPGDQKGLDIYTEAGGTPPAIGGKVTTVELDTSGTNNSYRGTIAVNRNDVKDNNFLSVEQSLKNAGNEFYFMIGKKILDVLVNSGNVPTETKANLANTTPVQAELEALVEVIRSRFPGTQRNRADTMFMNPADAALTVKTASTGGFYPFFSRFELGPTDDTDVINNSGLAQSLGLRAVWETPQIEAGTVLITKRDIAEVVGLREDLTIENFDLSVGGIYESDLVVRIDVQEAHSDVGAFKITDYEVP*
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