NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118733_100328840

Scaffold Ga0118733_100328840


Overview

Basic Information
Taxon OID3300010430 Open in IMG/M
Scaffold IDGa0118733_100328840 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3025
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location
Location NameAtlantic Coast
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041166Metagenome160Y
F098268Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0118733_1003288401F041166N/APDDSGVRTAAFGVYVYAPNQAAPSTSTALLVGKFQVGLSGATEGVITRVELPALVAPTPQVGDTSLIYPIERGKAEAMYLEKGYILCVGYFGDGPAAVSGGLSTSGVSIMAQGGFY*
Ga0118733_1003288402F098268GGAVTRKIKGSDGFGWKNYQPKKSDFSFSKIEGASTNRQMLAPLPFKKKFRPDQNLKDFSILFDYNYASMWTRWRRGYELYMYTNQALVGLNYTFRYAMNGQAGSGGTEIPGLMYMYPSSEQDMGMRMVVIKPRDSINLLDLGLAVKSVFDYDTTNKIIGVELTGNFGAPISFTTGEVFSDRFQADGVPKTTYNNYTVVGVGTKVGGPSVPASEAVQDTLFLSMTPDTSWTTIADQTFKAPAQSVPTVGEFLSSAMRMGCNCPDYLGREDFNLYKYNQKRNYPYTDTQDLKPGIYDPGSETFTGERPVQTRDFAGFTRDFGFIYTKKLLDLPTYQDSAGSSYSDPNVLYFQPRFCKHIYASFWDMQNRFENYKYLTAYLAQPNDEPMDDRYREYFYQTLAKQTRFLQSTEALQWWETYSPAKNTVPNHVLYSDMNPTMVKVLNFDTLASGVTSTLVPSGFIMFDIDEFNPLQPIPPSERPIIDGGIYIDGVASGVAPLITYDGGQYANGAQLPPLFAPAINGGTY*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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