NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118733_102883713

Scaffold Ga0118733_102883713


Overview

Basic Information
Taxon OID3300010430 Open in IMG/M
Scaffold IDGa0118733_102883713 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)946
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location
Location NameAtlantic Coast
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005019Metagenome415Y
F008795Metagenome328N
F016274Metagenome248Y

Sequences

Protein IDFamilyRBSSequence
Ga0118733_1028837132F016274AGGAMIRNKYGLPLVYDFNIDLRDKRRIRNLEYMKWNCPKGWKSLWSNKLDQLKKNISERKNKTLN*
Ga0118733_1028837133F005019N/AMYGDIRTCIKCKNKADVVEKGKDYCASCWFRYFSGETIEQYEKRTNELEQARKDKNEKS*
Ga0118733_1028837134F008795N/AMKKVKLESNEIELALNVAAKRFIGNVKMGKGFSYGYQGDYKKQLGDSFLGALGEVAYAKSSNSFYNGSYTDNLERNNDSDFQNNIEIRCQEKKDYNFLLIRP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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