Basic Information | |
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Taxon OID | 3300010856 Open in IMG/M |
Scaffold ID | Ga0126358_1187437 Open in IMG/M |
Source Dataset Name | Boreal forest soil eukaryotic communities from Alaska, USA - W4-2 Metatranscriptome (Eukaryote Community Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 538 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil → Forest Soil Eukaryotic Communities From Alaska, Usa, For A Soil Warming Experiment In A Boreal Forest |
Source Dataset Sampling Location | ||||||||
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Location Name | Alaska, USA | |||||||
Coordinates | Lat. (o) | 63.883 | Long. (o) | -145.733 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008133 | Metagenome / Metatranscriptome | 338 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0126358_11874371 | F008133 | N/A | LSFASKSAGRFVCLLPYRSFLHSTGSVLPDTPLLPLTRDRVARDGLSLARNGCHLSATSIPGSKFRACHFAPFQIRFRTRSALPLSYRDPVCPDHGRLTEAGPLHFHVPVRPTAPTASTPLRDFCLPRDQSVQRRLLPAGPPDESARFPFAPRRPYFFKCGSGSPFQVRYVSAGLLFLK |
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