NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126354_1020125

Scaffold Ga0126354_1020125


Overview

Basic Information
Taxon OID3300010857 Open in IMG/M
Scaffold IDGa0126354_1020125 Open in IMG/M
Source Dataset NameBoreal forest soil eukaryotic communities from Alaska, USA - W1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1027
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil → Forest Soil Eukaryotic Communities From Alaska, Usa, For A Soil Warming Experiment In A Boreal Forest

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)63.883Long. (o)-145.733Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006433Metagenome / Metatranscriptome373Y
F007657Metagenome / Metatranscriptome347Y
F061592Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0126354_10201251F061592AGGAMSAAPVRDPNQDATDLTADDPGDAMKDQLRRDVASWRDGRSDASSRHATDLSVAVARSIVPPTTAKMQRAKRVVVETKVAGSEKKPFGMSYDGTSRADYIKLMISRGAR*
Ga0126354_10201252F007657N/AMSWVTFEAATGGLVVVQLRHVVAIYDEQGEVKLATTAGGVHSLKEITVRRAAALVSRDQEAATELVRPEA*
Ga0126354_10201253F006433N/AMTDTSYRIVHREDDSFSVEIVSVGSLPQTAAGFASEAAAQGWIDQDQRFRVAAEPFGTPAGRRWRGH*
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