NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126344_1158057

Scaffold Ga0126344_1158057


Overview

Basic Information
Taxon OID3300010866 Open in IMG/M
Scaffold IDGa0126344_1158057 Open in IMG/M
Source Dataset NameBoreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1511
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil → Forest Soil Eukaryotic Communities From Alaska, Usa, For A Soil Warming Experiment In A Boreal Forest

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)63.883Long. (o)-145.733Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010638Metagenome / Metatranscriptome301Y
F093749Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0126344_11580571F010638N/ADMVVPLRIGKLHALMVIALGLFVANLTAGQDSSTTLLRLQRSKAYLNLDTNVVHAQGMNGVTYGKSGDVFSYPNSLACLLVYGDGKYVLEKRDEENLGRPKIKTAEGSLSAEDLQHLKSILDDENLKKIATPKPPELPDDAVTVREIESIDAQIDRSGKDQHFTTIKERLKTNATSGMDKYIDNGAPFQKTLNPLMKWFEGLEKKSKSEFKNAKPQYCAPMNVG*
Ga0126344_11580572F093749GGAMSTSAGTDQSAASPGIRLLLSEVQPGAMSADQYCTLVFTDHRFHSEKASRHHGSDTSRKIYEGSLSDEQWNALTGILENKELRDLKVPRSVPPLVMQDTHPYTISIARDGNYQNIEFLDNKSLKPYESQVRPLLQWWKSLRAHRTAQSSVPANQSCSLDSTRAVFSQ*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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