NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0124844_1122436

Scaffold Ga0124844_1122436


Overview

Basic Information
Taxon OID3300010868 Open in IMG/M
Scaffold IDGa0124844_1122436 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)992
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003516Metagenome / Metatranscriptome482Y
F013933Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0124844_11224361F003516GAGMTTTGKNLAKYLREFDQVFDAEDMQILGAAFDKAWEAVQASGVIYPNDKVELARAILAKHIIAAAKDGERDHSRLRDGALL
Ga0124844_11224362F013933GAGLGKRAVTELERKRLVETERRIAECEEYIAKQRELIERATQRGRSTEVAKTTLEALEESLRAFERQRRLLLDRLKERER*

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