Scaffold Ga0136897_10413899

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136897_10413899

Scaffold Ga0136897_10413899

Overview

Basic Information
Taxon OID	3300010872 Open in IMG/M
Scaffold ID	Ga0136897_10413899 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 5)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	603
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → Patulibacter minatonensis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	New Mexico, USA
Coordinates	Lat. (^o)	35.8911	Long. (^o)	-106.2978	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058777	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136897_104138991	F058777	N/A	RPSPAMIVALVALVAALGGTAYAAGRINGNSIVKQSIGGGKLKKKTLTGFQVNVNKLGEVPLAKRTTHTFWAVVHNPAGPNHATLTRASDAGVITATEAGGSVAVIFPINVSDCANVAGRNNDGTSPPVSGYAQTNVAPANPNAIEVHTKDKSGNNEDSDFQLIVVSPWRRRRSAWVARRGG*

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