NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126361_10511364

Scaffold Ga0126361_10511364


Overview

Basic Information
Taxon OID3300010876 Open in IMG/M
Scaffold IDGa0126361_10511364 Open in IMG/M
Source Dataset NameBoreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)509
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil → Forest Soil Eukaryotic Communities From Alaska, Usa, For A Soil Warming Experiment In A Boreal Forest

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)63.883Long. (o)-145.733Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000426Metagenome / Metatranscriptome1154Y
F040729Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0126361_105113641F000426N/AIHEVLRQKQTRYAQLGKQIEMLQQAAEKLREVAPLLAENDDEDNAVLMEVDEGVPGGDSKAAAAGAGASKAARPTAPRWP*
Ga0126361_105113642F040729GGAMTLLALLISNDDSACEILGRVLPASGIATERFSDLATALDRLRQQRFDALILDYEDAKAAAEVFEEGRKLNSGVAPVT

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