Scaffold Ga0136899_10171964

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136899_10171964

Scaffold Ga0136899_10171964

Overview

Basic Information
Taxon OID	3300010878 Open in IMG/M
Scaffold ID	Ga0136899_10171964 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 7)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	766
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	New Mexico, USA
Coordinates	Lat. (^o)	35.8911	Long. (^o)	-106.2978	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011467	Metagenome / Metatranscriptome	290	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136899_101719641	F011467	N/A	LQLLRNHAGIVQSDISYYDTQGNLQLDTDMLTRLQKILMPVLIDSLKYIPVPRITSSDIYREFWLDQIVLCSYDIIPENIRFHLETDSEFSFQDIEVKSTQTHLLIKLTKLRTELKDVEFYYKKKTFPELEDSGRVTFRIKGNGANLTLTYNIEQSTEDKVPVITQGKAEFDISDLEIEFDMTTIRHTLMVPMLTNLFKPQFKEQIEKQVENNLDGFMSKLGDMMMSTIGQANRPFLTGLDAAKKAIKTSDLSQI

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