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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010883 Open in IMG/M |
| Scaffold ID | Ga0133547_10029749 Open in IMG/M |
| Source Dataset Name | western Arctic Ocean co-assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13525 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (33.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 79.2466 | Long. (o) | -150.0613 | Alt. (m) | Depth (m) | 190 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001235 | Metagenome / Metatranscriptome | 741 | Y |
| F021393 | Metagenome / Metatranscriptome | 219 | N |
| F034394 | Metagenome | 175 | Y |
| F064801 | Metagenome / Metatranscriptome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0133547_1002974910 | F021393 | N/A | MVEEIKSETQVDTVEKTAQLVETEKSFQETVKSGIDTLTEVVQSIAESTADLSNRVKALETPTDLPLSPKGTVAGDDVGAKVTVPDKYQSNSVQAGLDDDRSGDKKPASDKGGLKMQQKSEHTFTTETPRPNAALETVDKSTQRDSSQILQDARSGGYEGLSNVAKGILTGKYYAPSPDEVGVY* |
| Ga0133547_1002974916 | F001235 | AGCAG | MATKLNVDKGGEDIGKKLWKKHQDNEYTRVSNYKEALCLNCFTKDVAAATIAMICGDCAGKRGREPLLTKISDKYYGLCLFCGEHKFHLEEINARFCHPCHRKIANITKDYNKKGGAFGTDPFWLRMRKIHGKDWKLILSGENGRKV* |
| Ga0133547_1002974918 | F064801 | N/A | MAQPYMSTDTGAKLPIFPFPLIMIYELADNIDALRVPIETLNREMFKNGFEVVEKFKFKCSNCSKEFQYKPLKDDNPDEQPFEQNQDNETGQLPRSDAKKATPTELNTTHEMECDSCGHGDMLRPIPENRKVLEDLLENPINGNDQTLEDLARQLERDLEIADNAYCLVLKSYDIDDSTGKINHKTTKIKEFLRIDPPQVAMIADSDGRIGYDDKRNKVYVCPRFEHRDKRLTEDKCDRCGAEALKAVIEVNSVYSVGIPQPKRVVYGEGEVIWKAGKYKPSLIYGFSPIYSIWSKAMALSHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDVLEQKATEDPYMIHPLLVESDKGGKNMAQWIDFTGSLKELEFTVIRKELRQIIGAVFGVLPLYYGELPSGWSQEGLQVTITNRAVKWGQDILFKAFLRKISKLVGVEDWDLRLKGGEENDKLRDLQIQGVEIQNMAAMQAMGFEVTRTHTGEFKVSKNPLLSPEAMILGIPEDKEPNTSGSKGRGRGTAAPKEDQQKMDGAPKKQRPSDKGGVAQGHPSSGAGTSMSKKMFLEPKKYPDGINSTNFEIVKKVLQDAVDFDWTKKKAVEELRSKAFMTVRQSRDIVKSELADIKRWDDDEEVS* |
| Ga0133547_100297496 | F034394 | N/A | MATTYCSVADVSDFLRVPITSTSTPSKTQVEKLIKRKEDELDRRIGHAFRVKKITREVHDLPLLYKFGWGTPVFLKHRRILDFSLAEGDKIEIWQGASAVWENILGSTSWYDIEYERGTLALRGFIFSILRKSRVRVTYRYGGEDYAGDLVVPLDIEDAIIKMVSIEILNTSFRMDELPTGGMTNTSESKRKWEEDIEKCVDNRRETFVIP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |