NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0133547_10203665

Scaffold Ga0133547_10203665


Overview

Basic Information
Taxon OID3300010883 Open in IMG/M
Scaffold IDGa0133547_10203665 Open in IMG/M
Source Dataset Namewestern Arctic Ocean co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4212
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)190
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042637Metagenome / Metatranscriptome158Y
F059370Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0133547_102036651F042637N/AHYLAVDFNNQDFKDLIKEHSTDKISEATIARNRNYAKQISDLVDAGIKVKTDVKEKVSVEDFVKKLLVFDADDPESMEILFTLKIQIFETDKLKKCKDKEYKAKLRTADTPIELLAMYNELND*
Ga0133547_102036652F059370N/AMIDVYCVNVGTKYNRDFDQKLKESVAKHLTLEHTFTCLTDKPEKEYDMAVTHPELRGVFHKLSLFQFTGDCLFFDLDILINDNIDFLAGEFNSLTVINSSPWKQQSLKDPLKFRLTQNTLINSSIMRWTDQRKVFERFLKHRDLYVRLYSGIDRYIYNEGVSYKTFMGDQISSWQEGTKHNTIMLHNQKYV*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.