NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133547_10421882

Scaffold Ga0133547_10421882


Overview

Basic Information
Taxon OID3300010883 Open in IMG/M
Scaffold IDGa0133547_10421882 Open in IMG/M
Source Dataset Namewestern Arctic Ocean co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2721
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)190
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031665Metagenome / Metatranscriptome182Y
F096078Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0133547_104218821F096078N/AMSKVHLLSKLLTQVKAYNSQEEKFELLFTYRKEPIFKRIITIAYNPWINFGMQDFAPKRMGKQFGMGIVKFLHILTDISDDKYTDKEKQFSCQMALTHIDQDEAELMVSLLRQELDLGLELETINRVWPGLIMIYPISIPTVGKQTTFESYPAAVQPISRGLRVNVIIHKDTVTYKNKLGEDITGWEMYDEQFMNLAQGQSTVFDGHAMEVNGTEIVETDNKKVLEADAENIRFVFWDVIRYDGFINGEDTRIGYNWRYNGIEHMILLAMDKNTTPCYDTVKADLVGSNEQLELTVQKYKSKCVIKSLAGTWTRGTDPTQIICD*
Ga0133547_104218823F031665GGAMLETEAMQISQFLQPLIGLGITAIFAFWLKEAVSDFVASIRWKMKPGFEPGDVVFLDGEKATIISIGFSETVFEIDNGRGKVWRYIYNKRIPTHRLEKVIVNKP*
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